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PecanScientific name: Carya illinoinensisChinese name: 碧根果/美国山核桃

Pecan is a thin-shelled nut, also known as American pecan or long pecan. It originated from the United States and Mexico. Nowadays, pecan is distributed in more than 20 countries and regions on five continents, including the United States, Canada, Mexico, Brazil, Argentina, Peru, Italy, France, Australia, Egypt, South Africa, Israel, Japan, China and other places.

Pecan is not only a world-famous commercial nut tree species but also a timber and garden tree species. Besides of the thin-shelled nut characteristics, pecan nut is crispy, delicious, and rich in nutrition.

Pecan has been introduced into China for more than 100 years. The provinces, cities (districts) introduced and cultivated in China are mainly in the Eastern Subtropical region and the Yangtze River with the scattered distribution.

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Data summary

We summarize and summarize the data we have in a simple script and present it visually

Choromsome number
32Pcs
Estimated genome size
649.75Mb
Total assembly
651.31Mb
Longest scaffold
4.92Mb
Number of scaffolds
3,860Pcs
N50 scaffold length
1.08Mb
Protein-coding genes
31,075Pcs
Repeat sequence
334.55Mb/50.43%

Expression Atlas

Through cartoon map to show the expression of genes in different parts and different periods, it is more intuitive and friendly.

JBrowse

A new type of genome browser that runs on the web, on the desktop, or embedded into your application, providing more visual genome analysis.

BLAST+

A new type of genome browser that runs on the web, on the desktop, or embedded into your application, providing more visual genome analysis.finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance.